species:   Fugra
pid:       PID1010
parent:    FgmilR-7dps-103
paralog:   
locus:     NC_026477.1:6669962-6670246
matures:   ['UUUUUAAGCUGUCGUUAUGAUA', 'UCGUUUAGUAUAGAUAGGAAGCU']
srr:       SRR6516243
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram NC_026477.1:6669962-6670246

0 out of bounds
13 alignments
10 proper strand
5 stranded perfect matches

                                                   **************************                                                                                                                                    ***************************                                                 
AGUAGUUUUUAAGCUGUCGUUAUGAUAUGAAGUUGGUUAGAAAAGUCGCAGCUGUGGGUACGUGAGGAACGGAUGAGAUGUUGUUGAAUGCUCCGAUGAUGAUUUCCCUCUUCAGAAGGUGGGUUUCGGCAUUUGCGUUAUGGAGAAGUUAUCGACUUUGUGUUGAUAAGGCAGGGAUUAUCAUGCAGCAGGAAGAUCAUUCGGCAAUUGAAGAGAGUGACGAAUUACCCGGGCGGUAAGAUAUCUAAGAACUUAUAGUUCGUUUAGUAUAGAUAGGAAGCUGCU
((((((((((...(((((...((((..(((((((..(((((...(((...((((((((((.((..(..((.........(((((((((((((((..(((((((.((((((((((.((.((((((......)))))).)).))))))..((((((((.....))))))))....))))..))))).))...)).))..)))))))))))........))..)..)))))))..)))))..))).))))).))))).))..))))...).))))...))))))))))
-----UUUUUAAGCUGUCGUUAUGAUA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ l=22 a=0 c
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCGUUUAGUAUAGAUAGGAAGCU--- l=23 a=0 c*
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGAGUGACGAAUUACCCGGGCGG------------------------------------------------- l=25 a=1 ma
-----------------------------------------------------GUGGGUACGUGAGGAACGGAUGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=24 a=0 ma*

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UAAGAUAUCUAAGAACUUAUAa--------------------------- l=22 a=1 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGAGUGACGAAUUACCCGGGCGG------------------------------------------------- l=25 a=1 (ma)
----------------------------------------------------------------------------------------------------------------------------------------------------------------UGUUGAUAAGGCAGGGAUU---------------------------------------------------------------------------------------------------------- l=19 a=1 
---------------------------------------------------------------------------------UGUUGAAUGCUCCGAUGAUG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=20 a=1 
------------------------------------------------------------------------------UGUUGUUGAAUGCUCCGAUGAUa---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=23 a=2 
-------------------------------------------------------------------AACGGAUGAGAUGUUGUUGAAU---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=1 
--------------------------------------------------------------UGAGGAACGGAUGAGAUGUc----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=20 a=2 
----------------------------------------------------UGUGGGUACGUGAGGAACGGAU------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=1 

mb-01010
ax-1001001
ku-01
ss-110010101100
fn-001
